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Demo of a Poissonian Cellular-Potts model

a MATLAB application (GUI) to support MINFLUX data visualization

GUI and functions for controlling the tracebot and automating microscopes.

This project aims to offer a platform for sharing ideas, resources, tools & techniques, interesting publications, interviews and stories from all our community members. https://grp-bio-it.embl-community.io/blog/

Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407

A Python client for the high-level DMA API.

This script implements a machine learning pipeline that integrates the ESM2 transformer-based protein model with a Logistic Regression classifier to predict the detectability of microprotein sequences by Mass Spectrometry. The script preprocesses data, extracts embeddings from sequences, performs feature selection, trains a logistic regression model, and evaluates its performance using multiple metrics.