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SVLT = Serving Vision to Living Things. A service for on-demand computer vision, targeted at image feedback in microscopy and other life sciences applications.

EMBL Python User Group

RBPbase - data base of high throughput RNA-binding protein detection studies

Deployment configuration for the Bretzel App project.

The Bretzel app's front-end code.

A PyTorch implementation of Tree-structured Conditional Random Fields.

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

These Python scripts implement binary classification models to predict detectability of noncanonical ORF microprotein sequences using i) a TensorFlow-Keras Classifier and ii) a Multi-Layer Perceptron (MLP) classifier to predict detectability of noncanonical ORF microprotein sequences derived 'HLA-predicted binding peptide sequences' from scikit-learn. The scripts preprocess the datasets, train an artificial neural network (ANN), evaluate performance using multiple metrics, and extract feature importance based on model weights.

Physicochemical properties and indices for amino-acid sequences (ported from R).

Demo of a Poissonian Cellular-Potts model