Explore projects
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Zimmermann-Kogadeeva Group / GEMsembler
MIT LicenseGEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
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Zimmermann-Kogadeeva Group / PlottingOnGenome
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A Python client for the high-level DMA API.
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CBBCS / webModules
GNU General Public License v2.0 or laterUpdated -
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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CBBCS / create-band
GNU General Public License v3.0 onlyUpdated -
Martin Larralde / PySWRD
GNU General Public License v3.0 onlyCython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.
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Martin Larralde / Software Engineering
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
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Martin Larralde / mini3di
GNU General Public License v3.0 onlyA NumPy port of the foldseek code for encoding protein structures to 3di.
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Martin Larralde / peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyPython interface to Prodigal, an ORF finder for genomes, progenomes and metagenomes.
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Laura Bianchi - Ruprecht lab (CRG)
Gopi Shah - MIF
Nicola Gritti - MIF
Keywords: Luxendo, MuVi SPIM, python, cellpose, apoptosis, segmentation, tracking, support, external, bioimage analysis, zebrafish
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