Explore projects

Cyntha van den Berg - Utrecht University; Anna Akhmanova - Utrecht University; Sebastian Schnorrenberg - ICLM; Ziqiang Huang - ICLM; Line Filter, Intensity Profile Plot, Fiji

Extends the Rarr package to deal with images in ome-zarr format.

Krim Anlas - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, matlab, TGMM, gastruloids, TGMM, tracking

Nick Marschlich - Trivedi lab;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, MIF, python, pescoids, ultrack, ome-zarr, napari, tracking

This repository contains recipes to build all the containers I use in my pipelines

Repository for the "Inference and evaluation of enhancer‐mediated gene regulatory networks with GRaNIE and GRaNPA" module of the "Systems biology: from large datasets to biological insight (2024)" course (https://www.ebi.ac.uk/training/events/systems-biology-large-datasets-biological-insight-2)