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Preparing for the curse setup notes

  • Add info on how to connect to the cluster from different OS
    • powershell does not work for Windows
    • make link to this page https://bio-it.embl.de/newcomer-guide/4-technical-setup/, for Windows recommended software is PuTTY
    • Is this warning meaningful? (gnome-ssh-askpass:4075494): Gtk-WARNING **: 09:59:33.101: cannot open display: error: unable to read askpass response from '/usr/libexec/openssh/gnome-ssh-askpass' - this warning is fine, probably git complains that it cannot store the password in gnome-keyring
  • How to work with tmux (attach, detach, select session) - added explanation in readme
  • Does it matter which folder in R?
  • What happens to R session when it is closed? - I checked and it continues running even when the browser window is closed
  • HIghlight things to select in jupyterlab
  • renv section unclear - how can it be restored? - added explanation in readme
  • advantages of running multiple commands with &&? - it's not necessary, so deleted
  • prepare multiQC discussion
  • Add chekcing contents of salmon pipeline output on screen (read counts in terminal, multiQC from Rstudio -> open in browser)
Edited by Bartosz Jan Bartmanski