Groovy script for kymograph creation

Input:

• intensity.tiff
• midline-binary.tiff

Analysis workflow idea:

• for each timepoint:
• convert binary to free line ROI object
• set the width
• run plot profile
• extract the profile (coordinates and values) for each timepoint
• find the longest profile
• create a new image with nx = number of timepoints and ny = longest profile
• paint values in such that we have the kymograph

Output:

• kymograph
• ???

Related things:

https://forum.image.sc/t/straighten-along-a-segmented-line-in-3d/41476