Explore projects

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

Miscellaneous public Scripts

Materials for Python Scripting section of Nov 2015 Software Carpentry Course.

Snakemake biological workflow management tutorial

Teaching material

Matlab scripts to process files generated by Cellcognition Create a mean statistics for events and grouped classes

Repository for the BTM 2017, Git course

Workflow for htseq-clip usage of YBX3 eCLIP.

Dynamic genome browsing

Data handling and graphics in R

Bio-IT Linux Commandline courses

files for git training

A collection of droplet macros for Fiji

An intro to R using the tidyverse.

Basic, one day stats course

Materials for an intermediate Python course, to be run at EMBL as part of the Bio-IT project.