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Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

This source code extracts distributions of nups inside core and non-core regions; and was developed to quantify different nups for the manuscript below: Otsuka "A quantitative map of nuclear pore assembly reveals two distinct mechanisms"

Physicochemical properties and indices for amino-acid sequences (ported from R).

This source code extracts distributions of nups inside core and non-core regions; and was developed to quantify different nups for the manuscript below: Otsuka "A quantitative map of nuclear pore assembly reveals two distinct mechanisms"

Demo of a Poissonian Cellular-Potts model

Interactive tutorial on hypothesis testing in R