Explore projects

This is an example how snakemake can detected failed slurm jobs.

Basic python library for interacting with the EMBL DMApp API

EMBL Python User Group

Matlab scripts to process files generated by Cellcognition Create a mean statistics for events and grouped classes

EMBL Bio-IT Community Documentation. https://grp-bio-it.embl-community.io/docs

A simple workflow for scRNAseq analysis

A script to count the number of sequences in a FASTA file.

Overlap_huminvs_with_elements

Scripts associated with the paper "Disentangling the impact of genetic and environmental factors on the proteotypes across individuals"

Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Scripts associated with the paper "Extensive impact of non-antibiotic drugs on human gut bacteria"

Rendered at https://grp-bio-it.embl-community.io/template-quarto

Inception-BN neural network model trained over protein crystal images

Model gives about 96% accuracy of classification image into three classes:

crystal

precipitate

no crystal

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

SNV calling software

SNV calling software

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

Daniel Heid - Zaugg Group;

Christian Tischer - CBA;

Wound healing analysis, High throughput microscopy

Lesson material.