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PDZnet meeting: EMBL PhD Course – Bioinformatics September 26-29, 2017

A four days practical course in bioinformatics softwares and approaches with a particular focus on protein-protein interactions. Mandatory for PDZnet fellows.

Archive of EMBL Hamburg Research Highlights

Source code related to the publication "Visualization of loop extrusion by DNA nanoscale tracing in single human cells" by Beckwith, Ødegård-Fougner et.al. DOI: https://doi.org/10.1101/2021.04.12.439407

Microscopy Pipeline Constructor (MyPiC)

Course materials for image analysis with the scientific Python stack (numpy/scipy/scikit-image/matplotlib)

Nextflow workflow to convert pyramidal images in PerkinElmer qptiff format to ome-tiff.

Originated from https://github.com/rackt/redux/tree/master/examples/real-world adjusted to work with embase-ng-dev

Recognize different cell types based on morphology features

Tools for online image analysis of images acquired with Zeiss confocal microscopes.

Materials for the ALMF/Bio-IT Image Analysis with Python series, running Spring/Summer 2018