Explore projects

Materials for the metagenomic bioinformatic course Feb 2020 (CRC1371 )

Liposome microarray (LiMA) analysis suite

A metagenomic SNP calling pipeline

Cython bindings and Python interface to HMMER3.

https://grp-bio-it-workshops.embl-community.io/carpentries-lesson-example

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

XDS plugin for fast reading of cbf.gz files.

Material for an intermediate-level course on Git & various features of EMBL's GitLab.

A script to count the number of sequences in a FASTA file.

Archive of EMBL Hamburg Research Highlights

PDZnet meeting: EMBL PhD Course – Bioinformatics September 26-29, 2017

A four days practical course in bioinformatics softwares and approaches with a particular focus on protein-protein interactions. Mandatory for PDZnet fellows.

Microscopy Pipeline Constructor (MyPiC)

Course materials for image analysis with the scientific Python stack (numpy/scipy/scikit-image/matplotlib)