Explore projects

Let's see if we can get EMBL GitLab to deploy to Surge.sh

galaxy tool to shift read position in a BAM file. Pretty handy for ATAC-seq. The shell script can also be used directly. Resulting BAM is sorted.

Rendered at: https://joynes.embl-community.io/template-pages-jekyll

Sergi Lopez Serrano - Meyerhans lab (UPF);

Montserrat Coll Llado - MIF;

Nicola Gritti - MIF

Keywords: bioimage analysis, support, Luxendo, MuVi SPIM, MIF, external

Materials for Python Scripting section of Nov 2015 Software Carpentry Course.

Code for fluoview automation

Materials for the ALMF/Bio-IT Image Analysis with Python series, running Spring/Summer 2018

https://ralves.embl-community.io/python_io_and_plotting

It's just this thing I am doing right now.

"Protein Bioinformatics for Beginners" course material

Huber group getting started guide

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

Strains and Vectors tables with DNA files

website

SNV calling software

https://ralves.embl-community.io/jug_at_embl