Explore projects

A script to count the number of sequences in a FASTA file.

Overlap_huminvs_with_elements

SNV calling software

Scripts associated with the paper "Disentangling the impact of genetic and environmental factors on the proteotypes across individuals"

Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Scripts associated with the paper "Extensive impact of non-antibiotic drugs on human gut bacteria"

Rendered at https://grp-bio-it.embl-community.io/template-quarto

Extension of AutoMicTools project for testing and running for feedback microscopy experiments with FluoView 3000 confocal microscope

Inception-BN neural network model trained over protein crystal images

Model gives about 96% accuracy of classification image into three classes:

crystal

precipitate

no crystal

Fork of the RCSB mmCIF-dict-suite, with CMake support added

The initial commit is taken from the v2.250 release, available at:

https://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/source.html

Synchronises the content of a directory on the server with a galaxy library's folder. The server dir sub-structure is preserved and all files linked using symbolic links. The script can be started in daemon mode or placed under cron monitoring.

Daniel Heid - Zaugg Group;

Christian Tischer - CBA;

Wound healing analysis, High throughput microscopy

Lesson material.

This repository contains recipes to build all the containers I use in my pipelines

A Fiji Groovy script to perform cardiac muscle movement analysis.