Explore projects

Summary of my mechanical keyboard and black mouse.

Open source framework for segmenting and tracking kinetochores from 4D live-cell imaging data.

Code notebooks to illustrate the use of the LOMAR package and produce figure material for the LOMAR paper.

A fork of the Bio-IT repository for materials associated with teaching image analysis. See https://stamper.embl-community.io/image-analysis-training-resources/ for rendered pages.

Immunofluorescence based assay for detecting immunity against covid-19. Collaboration with Vibor Lateka.

This is an example how snakemake can detected failed slurm jobs.

Basic python library for interacting with the EMBL DMApp API

EMBL Python User Group

Matlab scripts to process files generated by Cellcognition Create a mean statistics for events and grouped classes

EMBL Bio-IT Community Documentation. https://grp-bio-it.embl-community.io/docs

A simple workflow for scRNAseq analysis

A script to count the number of sequences in a FASTA file.

Overlap_huminvs_with_elements

SNV calling software

Scripts associated with the paper "Disentangling the impact of genetic and environmental factors on the proteotypes across individuals"

Materials for the Bio-IT "Image Processing with Python" course. Materials have been adapted from those originally forked from Karin Sasaki's GitHub repo.

ZEN Black Visual Basic code and ImageJ Jython scripts to enable the user to manually select the point where the next image is taken.

Scripts associated with the paper "Extensive impact of non-antibiotic drugs on human gut bacteria"