Update model_map_generation authored by Arjen Jakobi's avatar Arjen Jakobi
...@@ -10,12 +10,12 @@ In the following the procedure is illustrated for TRPV1 channel [2] from the EMD ...@@ -10,12 +10,12 @@ In the following the procedure is illustrated for TRPV1 channel [2] from the EMD
phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map -ma emd_5778_mask.map phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map -ma emd_5778_mask.map
``` ```
This procedure generates three files: This procedure generates four files:
- `pdb3j5p_4locscale.pdb`                 __(shifted) PDB model with same P1 unit cell as EM map__ - `pdb3j5p_4locscale.pdb`                 __(shifted) PDB model with same P1 unit cell as EM map__
- `pdb3j5p_4locscale.mrc`                 __(shifted) reference model map__ - `pdb3j5p_4locscale.mrc`                 __(shifted) reference model map__
- `emd_5778_full_4locscale.mrc`      __(shifted) original reconstruction__ - `emd_5778_full_4locscale.mrc`      __(shifted) original reconstruction__
- `emd_5778_mask.mrc`      __(shifted) mask__ - `emd_5778_mask.mrc`                         __(shifted) mask__
<br> <br>
The two MRC maps produced (`pdb3j5p_4locscale.mrc` and `emd_5778_full_4locscale.mrc`) along with the mask (`emd_5778_mask_4locscale.mrc`) are to be used for input in the LocScale procedure. The two MRC maps produced (`pdb3j5p_4locscale.mrc` and `emd_5778_full_4locscale.mrc`) along with the mask (`emd_5778_mask_4locscale.mrc`) are to be used for input in the LocScale procedure.
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