model_map_generation.md

@@ -7,7 +7,7 @@ The model map can be generated by any procedure that computes the model map from
 In the following the procedure is illustrated for TRPV1 channel [2] from the EMDB Model Challenge [3]. All required files can be found [here](http://emsearch.rutgers.edu/atlas/5778_downloads.html).
  
 ```
-phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map
+phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map -ma emd_5778_mask.map
 ```
   
 This procedure generates three files: