model_map_generation.md

@@ -13,6 +13,13 @@ In the following the procedure is illustrated for TRPV1 channel [1]. The files c
 phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map
 ```
   
+###### This procedure generates three files:  
+  
+- `pdb3j5p_4locscale.pdb`                  (shifted) PDB model with same P1 unit cell as map 
+- `pdb3j5p_4locscale.mrc`                 Reference model map
+- `emd_5778_full_4locscale.mrc`      (shifted) original reconstruction
+
+
 #### Link to [source](https://git.embl.de/jakobi/LocScale/blob/master/prepare_locscale_input.py)  
 [recommended procedure](model_map_generation_from_arbitrary_files)
 #### __PLEASE download the following [electron form factor table](electron_scattering.py) for use with pdb2map.py.__